vmtk in 3DSlicer

vmtk is now featured as an extension (a set of modules) for 3D Slicer.

3D Slicer is a free, open-source software package for visualization and image analysis.

The 3D Slicer application is available at http://www.slicer.org.

New Tutorials: Centerline Extraction of Coronary Arteries using VMTK in 3D Slicer

Download here or view online.

Existing modules:

VMTKVesselEnhancement

This module provides the vessel enhancement filters of VMTK in 3D Slicer. These filters are able to highlight or enhance line-like, plate-like and blob-like structures.

Installation notes and documentation are available here.

VMTKEasyLevelSetSegmentation

This module provides level-set segmentation in 3D Slicer using selected methods of the level-set segmentation process of VMTK. The module targets easy-to-use manual segmentation of tubular and blob-like structures. The methods provided by this module are Fast Marching Upwind Gradient Initialization and Geodesic Active Contours Evolution.

Features include parameter presets for certain use-cases and volume rendering of segmentation results.

Installation notes and documentation are available here.

VMTKCenterlines

Centerline computation of surface modules using VMTK in 3D Slicer.

Installation notes and documentation are available here.

VMTKLevelSetSegmentation

This module provides the level-set segmentation process of VMTK in 3D Slicer. The process targets manual segmentation of tubular and blob-like structures.

Installation notes and documentation are available here.

The following screencasts show examples of segmentation using the VMTK in 3D Slicer modules.

VMTKEasyLevelSetSegmentation